High schooler Nanami Momozono has quite a few problems of late, beginning with her absentee father being in such extreme debt that they lose everything. Downtrodden and homeless, she runs into a man being harassed by a dog. After helping him, she explains her situation, and to her surprise, he offers her his home in gratitude. But when she discovers that said home is a rundown shrine, she tries to leave; however, she is caught by two shrine spirits and a fox familiar named Tomoe. They mistake her for the man Nanami rescued—the land god of the shrine, Mikage. Realizing that Mikage must have sent her there as a replacement god, Tomoe leaves abruptly, refusing to serve a human.

Rather than going back to being homeless, Nanami immerses herself in her divine duties. But if she must keep things running smoothly, she will need the help of a certain hot-headed fox. In her fumbling attempt to seek out Tomoe, she lands in trouble and ends up sealing a contract with him. Now the two must traverse the path of godhood together as god and familiar; but it will not be easy, for new threats arise in the form of a youkai who wants to devour the girl, a snake that wants to marry her, and Nanami's own unexpected feelings for her new familiar.

Season 2

Nanami Momozono and her familiars Tomoe and Mizuki have survived quite a few challenges since Nanami took up the mantle of Mikage Shrine's patron god. Naturally, the wind god Otohiko comes to invite Nanami to the Divine Assembly in Izumo, the home of the gods, and Nanami chooses to take Mizuki with her, leaving Tomoe to pose as her at school. However, she has an ulterior motive for attending the Divine Assembly: to discover the whereabouts of the missing Lord Mikage, the former god of the shrine.

After her adventures in Izumo, Nanami meets Botanmaru, a tengu child looking for someone she knows all too well—tengu turned goth idol Shinjirou Kurama. Botanmaru needs Shinjirou, their prince, to return home to Mount Kurama and stop the tyranny of Jirou, who has taken over the rule of their hometown. However, Nanami soon discovers a force much darker than Jirou is at work on the mountain.

As a fledgling god becoming more accustomed to divinity, Nanami finds herself dealing with a tengu rebellion, her blooming feelings for Tomoe, and a strange man with ties to both Tomoe's past and Nanami's future.